I know that there's some problems with this, and I also had it, and I think it was discussed many times and/or there was no solution so far for it.
I'm talking about your folders with the seasons messed a bit up, showing f.ex. season 3, then 2 then 1, instead of the other way around. I know that there's a problem with the order you copy the seasons to your Mede8er, so if you would copy season 1 last, it would also show up last in your folder, and you couldn't change that.
I had now problems with the Simpsons, of which I have 21 seasons.
It then showed season 1, then 11, 12, 13... 19,2, 20, 21, 3, 4... which is quite normal, as 11 is before 2. That was annoying me, because the folder looked a bit like wildly organized.
I then changed the 1-9 to a 01-09, and straight away the seasons showed up in the correct order.
So I tried that also with series which I only have 2 or 3 seasons of, and which were also showing sometimes the wrong way around, first season 2, then season 1, and renaming them to season 01 and season 02 made them also appear in the correct order.
So I did that for all of my folders with seasons, and everything looks perfectly organized now.
If this was already posted somewhere else, or is known, please let me know and feel free to delete this topic.